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Article: Automated analysis of filamentous microbial morphology with AnaMorf

TitleAutomated analysis of filamentous microbial morphology with AnaMorf
Authors
KeywordsImageJ
filamentous microbes
image analysis
morphology
Issue Date2015
PublisherAmerican Chemical Society. The Journal's web site is located at http://pubs.acs.org/bp
Citation
Biotechnology Progress, 2015, v. 31 n. 3, p. 849-852 How to Cite?
AbstractThe morphological quantification of filamentous microbes represents an important analytical technique in the optimization of bioprocesses involving such organisms, given the demonstrated links between morphology and metabolite yield. However, in many studies, much of this quantification has required some degree of manual intervention, if it has been conducted at all, burdening biotechnologists with a time-consuming process and potentially introducing bias into analyses. Here, software for the automated quantification of filamentous microbes is presented, implemented as a plug-in for the widely used, freely available image analysis package, ImageJ. The software, together with all related source code, documentation and test data, is freely available to the community via an online repository.
Persistent Identifierhttp://hdl.handle.net/10722/279914
ISSN
2017 Impact Factor: 1.947
2015 SCImago Journal Rankings: 0.736

 

DC FieldValueLanguage
dc.contributor.authorBarry, DJ-
dc.contributor.authorWilliams, GA-
dc.contributor.authorChan, C-
dc.date.accessioned2019-12-23T08:23:37Z-
dc.date.available2019-12-23T08:23:37Z-
dc.date.issued2015-
dc.identifier.citationBiotechnology Progress, 2015, v. 31 n. 3, p. 849-852-
dc.identifier.issn8756-7938-
dc.identifier.urihttp://hdl.handle.net/10722/279914-
dc.description.abstractThe morphological quantification of filamentous microbes represents an important analytical technique in the optimization of bioprocesses involving such organisms, given the demonstrated links between morphology and metabolite yield. However, in many studies, much of this quantification has required some degree of manual intervention, if it has been conducted at all, burdening biotechnologists with a time-consuming process and potentially introducing bias into analyses. Here, software for the automated quantification of filamentous microbes is presented, implemented as a plug-in for the widely used, freely available image analysis package, ImageJ. The software, together with all related source code, documentation and test data, is freely available to the community via an online repository.-
dc.languageeng-
dc.publisherAmerican Chemical Society. The Journal's web site is located at http://pubs.acs.org/bp-
dc.relation.ispartofBiotechnology Progress-
dc.rightsThis document is the Accepted Manuscript version of a Published Work that appeared in final form in [JournalTitle], copyright © American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see [insert ACS Articles on Request author-directed link to Published Work, see http://pubs.acs.org/page/policy/articlesonrequest/index.html].-
dc.subjectImageJ-
dc.subjectfilamentous microbes-
dc.subjectimage analysis-
dc.subjectmorphology-
dc.titleAutomated analysis of filamentous microbial morphology with AnaMorf-
dc.typeArticle-
dc.identifier.emailChan, C: ckchan09@hku.hk-
dc.identifier.authorityChan, C=rp00892-
dc.description.naturelink_to_subscribed_fulltext-
dc.identifier.doi10.1002/btpr.2087-
dc.identifier.pmid25864556-
dc.identifier.scopuseid_2-s2.0-84931563529-
dc.identifier.hkuros308710-
dc.identifier.volume31-
dc.identifier.issue3-
dc.identifier.spage849-
dc.identifier.epage852-
dc.publisher.placeUnited States-

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