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Title	Author(s)	Issue Date
An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China Journal:Science	Tian, H Liu, Y Li, Y Wu, CH Chen, B Kraemer, MUG Li, B Cai, J Xu, B Yang, Q Wang, B Yang, P Cui, Y Song, Y Zheng, P Wang, Q Bjornstad, ON Yang, R Grenfell, BT Pybus, OG Dye, C	2020
Evolutionary and molecular analysis of the emergent severe fever with thrombocytopenia syndrome virus Journal:Epidemics	Lam, TTY Liu, W Bowden, TA Cui, N Zhuang, L Liu, K Zhang, YY Cao, WC Pybus, OG	2013
Evolutionary and transmission dynamics of reassortant H5N1 influenza virus in Indonesia Journal:PLoS Pathogens	Lam, TTY Hon, CC Pybus, OG Kosakovsky Pond, SL Wong, RTY Yip, CW Zeng, F Leung, FCC	2008
Evolutionary genetics of human enterovirus 71: Origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene Journal:Journal of Virology	Tee, KK Lam, TTY Chan, YF Bible, JM Kamarulzaman, A Tong, CYW Takebe, Y Pybus, OG	2010
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen) Journal:Virus Evolution	Rambaut, A Lam, TY Max Carvalho, L Pybus, OG	2016
Full-Genome Deep Sequencing and Phylogenetic Analysis of Novel Human Betacoronavirus Journal:Emerging Infectious Diseases	Cotten, M Lam, TY Watson, SJ Palser, AL Petrova, V Grant, P Pybus, OG Rambaut, A Guan, Y Pillay, D Kellam, P Nastouli, E	2013
The genesis and source of the H7N9 influenza viruses causing human infections in China Journal:Nature	Lam, TY Wang, J Shen, Y Zhou, B Duan, L Cheung, CL Ma, C Lycett, SJ Leung, CYH Chen, X Li, L Hong, W Chai, Y Zhou, L Liang, H Ou, Z Liu, Y Farooqui, A Kelvin, DJ Poon, LLM Smith, DK Pybus, OG Leung, GM Shu, Y Webster, RG Webby, RJ Peiris, JSM Rambaut, A Zhu, H Guan, Y	2013
Genomic surveillance of avian-origin influenza A viruses causing human disease Journal:Genome Medicine	Lam, TY Pybus, OG	2018
Long-term evolution and transmission dynamics of swine influenza A virus Journal:Nature	Vijaykrishna, D Smith, GJD Pybus, OG Zhu, H Bhatt, S Poon, LLM Riley, S Bahl, J Ma, SK Cheung, CL Perera, RAPM Chen, H Shortridge, KF Webby, RJ Webster, RG Guan, Y Peiris, JSM	2011
Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013 Journal:Journal of Virology	Watson, SJ Pinky, L Reid, SM Lam, TY Cotten, M Kelly, M Van Reeth, K Qiu, Y Simon, G Bonin, E Foni, E Chiapponi, C Larsen, L Hjulsager, C Markowska-Daniel, I Urbaniak, K Dürrwald, R Schlegel, M Huovilainen, A Davidson, I Dán, A Loeffen, W Edwards, S Bublot, M Vila, T Maldonado, J Valls, L Brown, IH Pybus, OG Kellam, P	2015
Molecular Epidemiology of H5N1 Avian Influenza Virus: Correlations between Antigenic Drift, Geographical Migration and Expansion of Viral Diversity Proceeding/Conference:International Journal of Infectious Diseases	Lam, TY Pybus, OG Hon, CC Leung, FCC	2008
Monitoring key epidemiological parameters of SARS-CoV-2 transmission Journal:Nature Medicine	Kraemer, MUG Pybus, OG Fraser, C Cauchemez, S Rambaut, A Cowling, BJ	2021
Occurrence and Reassortment of Avian Influenza A (H7N9) Viruses Derived from Coinfected Birds in China Journal:Journal of Virology	Liu, W Fan, H Raghwani, J Lam, TY Li, J Pybus, OG Yao, HW Wo, Y Liu, K An, XP Pei, GQ Li, H Wang, HY Zhao, JJ Jiang, T Ma, MJ Xia, X Dong, YD Zhao, TY Jiang, JF Yang, YH Guan, Y Tong, Y Cao, WC	2014
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza a epidemic Journal:Nature	Smith, GJD Vijaykrishna, D Bahl, J Lycett, SJ Worobey, M Pybus, OG Ma, SK Cheung, CL Raghwani, J Bhatt, S Peiris, JSM Guan, Y Rambaut, A	2009
Phylodynamics of H5N1 avian influenza virus in Indonesia Journal:Molecular Ecology	Lam, TTY Hon, CC Lemey, P Pybus, OG Shi, M Tun, HM Li, J Jiang, J Holmes, EC Leung, FCC	2012
Recent epidemic of acute hepatitis C virus in HIV-positive men who have sex with men linked to high-risk sexual behaviours Journal:AIDS	Danta, M Hui, KMC Brown, D Bhagani, S Pybus, OG Sabin, CA Nelson, M Fisher, M Johnson, MA Dusheiko, GM	2007
The recombinant origin of emerging human norovirus GII.4/2008: Intra-genotypic exchange of the capsid P2 domain Journal:Journal of General Virology	Lam, TTY Zhu, H Smith, DK Guan, Y Holmes, EC Pybus, OG	2012
Systematic phylogenetic analysis of influenza A virus reveals many novel mosaic genome segments Journal:Infection, Genetics and Evolution	Lam, TY Chong, YL Shi, M Hon, CC LI, J Martin, DP Tang, JWT Mok, CK Shih, SR Yip, CW Jiang, J Hui, RKH Pybus, OG Holmes, EC Leung, FCC	2013
The evolutionary dynamics of influenza A virus adaptation to mammalian hosts Journal:Royal Society of London. Philosophical Transactions B. Biological Sciences	Bhatt, S Lam, TT Lycett, SJ Leigh Brown, AJ Bowden, TA Holmes, EC Guan, Y Wood, JL Brown, IH Kellam, P Combating Swine Influenza Consortium,Pybus, OG	2013
The rapidly expanding CRF01_AE epidemic in China is driven by multiple lineages of HIV-1 viruses introduced in the 1990s Journal:Aids	Feng, Y He, X Hsi, JH Li, F Li, X Wang, Q Ruan, Y Xing, H Lam, TY Pybus, OG Takebe, Y Shao, Y	2013

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