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Article: A class-wide phylogenetic assessment of Dothideomycetes

TitleA class-wide phylogenetic assessment of Dothideomycetes
Authors
Schoch, CLCrous, PWGroenewald, JZBoehm, EWABurgess, TIDe Gruyter, JDe Hoog, GSDixon, LJGrube, MGueidan, CHarada, YHatakeyama, SHirayama, KHosoya, THuhndorf, SMHyde, KDJones, EBGKohlmeyer, JKruys, ÅLi, YMLücking, RLumbsch, HTMarvanová, LMbatchou, JSMcvay, AHMiller, ANMugambi, GKMuggia, LNelsen, MPNelson, POwensby, CAPhillips, AJLPhongpaichit, SPointing, SBPujadeRenaud, VRaja, HAPlata, ERRobbertse, BRuibal, CSakayaroj, JSano, TSelbmann, LShearer, CAShirouzu, TSlippers, BSuetrong, STanaka, KVolkmannKohlmeyer, BWingfield, MJWood, ARWoudenberg, JHCYonezawa, HZhang, YSpatafora, JW
KeywordsAscomycota
Dothideomyceta
Fungal Evolution
Lichens
Multigene Phylogeny
Pezizomycotina
Phylogenomics
Plant Pathogens
Saprobes
Tree Of Life
Issue Date2009
Citation
Studies In Mycology, 2009, v. 64, p. 1-15 How to Cite?
DOI: http://dx.doi.org/10.3114/sim.2009.64.01
AbstractWe present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon. © 2009 CBS-KNAW Fungal Biodiversity Centre.
Persistent Identifierhttp://hdl.handle.net/10722/179201
ISSN
0166-0616
2023 Impact Factor: 14.1
2023 SCImago Journal Rankings: 4.821
ISI Accession Number ID
WOS:000274365900002
References
References in Scopus

 

DC FieldValueLanguage
dc.contributor.authorSchoch, CLen_US
dc.contributor.authorCrous, PWen_US
dc.contributor.authorGroenewald, JZen_US
dc.contributor.authorBoehm, EWAen_US
dc.contributor.authorBurgess, TIen_US
dc.contributor.authorDe Gruyter, Jen_US
dc.contributor.authorDe Hoog, GSen_US
dc.contributor.authorDixon, LJen_US
dc.contributor.authorGrube, Men_US
dc.contributor.authorGueidan, Cen_US
dc.contributor.authorHarada, Yen_US
dc.contributor.authorHatakeyama, Sen_US
dc.contributor.authorHirayama, Ken_US
dc.contributor.authorHosoya, Ten_US
dc.contributor.authorHuhndorf, SMen_US
dc.contributor.authorHyde, KDen_US
dc.contributor.authorJones, EBGen_US
dc.contributor.authorKohlmeyer, Jen_US
dc.contributor.authorKruys, Åen_US
dc.contributor.authorLi, YMen_US
dc.contributor.authorLücking, Ren_US
dc.contributor.authorLumbsch, HTen_US
dc.contributor.authorMarvanová, Len_US
dc.contributor.authorMbatchou, JSen_US
dc.contributor.authorMcvay, AHen_US
dc.contributor.authorMiller, ANen_US
dc.contributor.authorMugambi, GKen_US
dc.contributor.authorMuggia, Len_US
dc.contributor.authorNelsen, MPen_US
dc.contributor.authorNelson, Pen_US
dc.contributor.authorOwensby, CAen_US
dc.contributor.authorPhillips, AJLen_US
dc.contributor.authorPhongpaichit, Sen_US
dc.contributor.authorPointing, SBen_US
dc.contributor.authorPujadeRenaud, Ven_US
dc.contributor.authorRaja, HAen_US
dc.contributor.authorPlata, ERen_US
dc.contributor.authorRobbertse, Ben_US
dc.contributor.authorRuibal, Cen_US
dc.contributor.authorSakayaroj, Jen_US
dc.contributor.authorSano, Ten_US
dc.contributor.authorSelbmann, Len_US
dc.contributor.authorShearer, CAen_US
dc.contributor.authorShirouzu, Ten_US
dc.contributor.authorSlippers, Ben_US
dc.contributor.authorSuetrong, Sen_US
dc.contributor.authorTanaka, Ken_US
dc.contributor.authorVolkmannKohlmeyer, Ben_US
dc.contributor.authorWingfield, MJen_US
dc.contributor.authorWood, ARen_US
dc.contributor.authorWoudenberg, JHCen_US
dc.contributor.authorYonezawa, Hen_US
dc.contributor.authorZhang, Yen_US
dc.contributor.authorSpatafora, JWen_US
dc.date.accessioned2012-12-19T09:52:52Z-
dc.date.available2012-12-19T09:52:52Z-
dc.date.issued2009en_US
dc.identifier.citationStudies In Mycology, 2009, v. 64, p. 1-15en_US
dc.identifier.issn0166-0616en_US
dc.identifier.urihttp://hdl.handle.net/10722/179201-
dc.description.abstractWe present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon. © 2009 CBS-KNAW Fungal Biodiversity Centre.en_US
dc.languageengen_US
dc.relation.ispartofStudies in Mycologyen_US
dc.subjectAscomycotaen_US
dc.subjectDothideomycetaen_US
dc.subjectFungal Evolutionen_US
dc.subjectLichensen_US
dc.subjectMultigene Phylogenyen_US
dc.subjectPezizomycotinaen_US
dc.subjectPhylogenomicsen_US
dc.subjectPlant Pathogensen_US
dc.subjectSaprobesen_US
dc.subjectTree Of Lifeen_US
dc.titleA class-wide phylogenetic assessment of Dothideomycetesen_US
dc.typeArticleen_US
dc.identifier.emailPointing, SB: pointing@hkucc.hku.hken_US
dc.identifier.authorityPointing, SB=rp00771en_US
dc.description.naturelink_to_subscribed_fulltexten_US
dc.identifier.doi10.3114/sim.2009.64.01en_US
dc.identifier.scopuseid_2-s2.0-77954765891en_US
dc.relation.referenceshttp://www.scopus.com/mlt/select.url?eid=2-s2.0-77954765891&selection=ref&src=s&origin=recordpageen_US
dc.identifier.volume64en_US
dc.identifier.spage1en_US
dc.identifier.epage15en_US
dc.identifier.isiWOS:000274365900002-
dc.publisher.placeNetherlandsen_US
dc.identifier.scopusauthoridSchoch, CL=7005339074en_US
dc.identifier.scopusauthoridCrous, PW=7101909107en_US
dc.identifier.scopusauthoridGroenewald, JZ=7004957342en_US
dc.identifier.scopusauthoridBoehm, EWA=36179285600en_US
dc.identifier.scopusauthoridBurgess, TI=7005669477en_US
dc.identifier.scopusauthoridde Gruyter, J=6602754807en_US
dc.identifier.scopusauthoridde Hoog, GS=7006254766en_US
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dc.identifier.scopusauthoridGrube, M=7006877392en_US
dc.identifier.scopusauthoridGueidan, C=6507067277en_US
dc.identifier.scopusauthoridHarada, Y=36179926600en_US
dc.identifier.scopusauthoridHatakeyama, S=8967496000en_US
dc.identifier.scopusauthoridHirayama, K=36179705700en_US
dc.identifier.scopusauthoridHosoya, T=7102016103en_US
dc.identifier.scopusauthoridHuhndorf, SM=6603921477en_US
dc.identifier.scopusauthoridHyde, KD=7102588111en_US
dc.identifier.scopusauthoridJones, EBG=24760500100en_US
dc.identifier.scopusauthoridKohlmeyer, J=7004598265en_US
dc.identifier.scopusauthoridKruys, Å=25027790400en_US
dc.identifier.scopusauthoridLi, YM=36078824800en_US
dc.identifier.scopusauthoridLücking, R=7005161482en_US
dc.identifier.scopusauthoridLumbsch, HT=24397466600en_US
dc.identifier.scopusauthoridMarvanová, L=6603945775en_US
dc.identifier.scopusauthoridMbatchou, JS=36179753500en_US
dc.identifier.scopusauthoridMcVay, AH=36598623300en_US
dc.identifier.scopusauthoridMiller, AN=7406231251en_US
dc.identifier.scopusauthoridMugambi, GK=19337335900en_US
dc.identifier.scopusauthoridMuggia, L=23467279800en_US
dc.identifier.scopusauthoridNelsen, MP=13409519700en_US
dc.identifier.scopusauthoridNelson, P=55085294900en_US
dc.identifier.scopusauthoridOwensby, CA=36599163300en_US
dc.identifier.scopusauthoridPhillips, AJL=7401658885en_US
dc.identifier.scopusauthoridPhongpaichit, S=6508284201en_US
dc.identifier.scopusauthoridPointing, SB=6603986412en_US
dc.identifier.scopusauthoridPujadeRenaud, V=6506940215en_US
dc.identifier.scopusauthoridRaja, HA=8354311400en_US
dc.identifier.scopusauthoridPlata, ER=35337640900en_US
dc.identifier.scopusauthoridRobbertse, B=6603427481en_US
dc.identifier.scopusauthoridRuibal, C=8288434500en_US
dc.identifier.scopusauthoridSakayaroj, J=8349162000en_US
dc.identifier.scopusauthoridSano, T=7402240726en_US
dc.identifier.scopusauthoridSelbmann, L=6602609568en_US
dc.identifier.scopusauthoridShearer, CA=7006494121en_US
dc.identifier.scopusauthoridShirouzu, T=23036946900en_US
dc.identifier.scopusauthoridSlippers, B=6603218395en_US
dc.identifier.scopusauthoridSuetrong, S=16319823700en_US
dc.identifier.scopusauthoridTanaka, K=36088614700en_US
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dc.identifier.scopusauthoridSpatafora, JW=6603806989en_US
dc.identifier.citeulike6788344-
dc.identifier.issnl0166-0616-

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