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- Publisher Website: 10.1007/978-1-62703-514-9_6
- Scopus: eid_2-s2.0-84881104781
- PMID: 23872971
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Book Chapter: Short Read Mapping for Exome Sequencing
| Title | Short Read Mapping for Exome Sequencing |
|---|---|
| Authors | |
| Keywords | Burrows-Wheeler aligner Exome sequencing Next-generation sequencing Short read mapping |
| Issue Date | 18-Sep-2013 |
| Publisher | Humana Press |
| Citation | Short Read Mapping for Exome Sequencing. In Shomorn, N (Ed.), Deep Sequencing Data Analysis, p. 93-111. New York: Humana Press How to Cite? |
| Abstract | Mapping short reads to the reference genome is very often the prerequisite for applications utilizing the next-generation sequencing technologies. A dozen of software tools developed for this purpose have been widely used. But many practical issues remained when utilizing them to build a computational pipeline for downstream analyses. In this chapter, we describe the read mapping procedures adopted in our lab for the exome sequencing studies as an example to illustrate those practical details. |
| Persistent Identifier | http://hdl.handle.net/10722/191029 |
| ISBN | |
| ISSN | 2020 SCImago Journal Rankings: 0.711 |
| Series/Report no. | Methods in molecular biology, 1038 |
| DC Field | Value | Language |
|---|---|---|
| dc.contributor.author | Zhou, X | en_US |
| dc.contributor.author | Bao, S | en_US |
| dc.contributor.author | Wang, BB | en_US |
| dc.contributor.author | Zhang, X | en_US |
| dc.contributor.author | Song, Y | en_US |
| dc.date.accessioned | 2013-09-17T16:09:59Z | - |
| dc.date.available | 2013-09-17T16:09:59Z | - |
| dc.date.issued | 2013-09-18 | - |
| dc.identifier.citation | Short Read Mapping for Exome Sequencing. In Shomorn, N (Ed.), Deep Sequencing Data Analysis, p. 93-111. New York: Humana Press | en_US |
| dc.identifier.isbn | 9781627035132 | en_US |
| dc.identifier.issn | 1064-3745 | - |
| dc.identifier.uri | http://hdl.handle.net/10722/191029 | - |
| dc.description.abstract | Mapping short reads to the reference genome is very often the prerequisite for applications utilizing the next-generation sequencing technologies. A dozen of software tools developed for this purpose have been widely used. But many practical issues remained when utilizing them to build a computational pipeline for downstream analyses. In this chapter, we describe the read mapping procedures adopted in our lab for the exome sequencing studies as an example to illustrate those practical details. | - |
| dc.language | eng | en_US |
| dc.publisher | Humana Press | en_US |
| dc.relation.ispartof | Deep Sequencing Data Analysis | en_US |
| dc.relation.ispartofseries | Methods in molecular biology, 1038 | - |
| dc.subject | Burrows-Wheeler aligner | - |
| dc.subject | Exome sequencing | - |
| dc.subject | Next-generation sequencing | - |
| dc.subject | Short read mapping | - |
| dc.title | Short Read Mapping for Exome Sequencing | en_US |
| dc.type | Book_Chapter | en_US |
| dc.identifier.email | Song, Y: songy@hku.hk | en_US |
| dc.identifier.authority | Song, Y=rp00488 | en_US |
| dc.identifier.doi | 10.1007/978-1-62703-514-9_6 | - |
| dc.identifier.pmid | 23872971 | - |
| dc.identifier.scopus | eid_2-s2.0-84881104781 | - |
| dc.identifier.hkuros | 222274 | en_US |
| dc.identifier.hkuros | 228250 | - |
| dc.identifier.spage | 93 | en_US |
| dc.identifier.epage | 111 | en_US |
| dc.identifier.eissn | 1940-6029 | - |
| dc.publisher.place | New York | - |
| dc.identifier.issnl | 1064-3745 | - |