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Article: Complete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4

TitleComplete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4
Authors
PAN, YKong, KFTsang, JSH
KeywordsBurkholderia caribensis
Dehalogenase
Genome sequence
Glycolate operon
Haloacid degradation
Issue Date2015
Citation
Standards in Genomic Sciences, 2015, v. 10, p. 114 How to Cite?
DOI: http://dx.doi.org/10.1186/s40793-015-0109-7
AbstractBurkholderia caribensis MBA4 was isolated from soil for its capability to grow on haloacids. This bacterium has a genome size of 9,482,704 bp. Here we report the genome sequences and annotation, together with characteristics of the genome. The complete genome sequence consists of three replicons, comprising 9056 protein-coding genes and 80 RNA genes. Genes responsible for dehalogenation and uptake of haloacids were arranged as an operon. While dehalogenation of haloacetate would produce glycolate, three glycolate operons were identified. Two of these operons contain an upstream glcC regulator gene. It is likely that the expression of one of these operons is responsive to haloacetate. Genes responsible for the metabolism of dehalogenation product of halopropionate were also identified.
Persistent Identifierhttp://hdl.handle.net/10722/222505
PubMed Central ID
PMC4665904
ISI Accession Number ID
WOS:000368006000001

 

DC FieldValueLanguage
dc.contributor.authorPAN, Y-
dc.contributor.authorKong, KF-
dc.contributor.authorTsang, JSH-
dc.date.accessioned2016-01-18T07:41:48Z-
dc.date.available2016-01-18T07:41:48Z-
dc.date.issued2015-
dc.identifier.citationStandards in Genomic Sciences, 2015, v. 10, p. 114-
dc.identifier.urihttp://hdl.handle.net/10722/222505-
dc.description.abstractBurkholderia caribensis MBA4 was isolated from soil for its capability to grow on haloacids. This bacterium has a genome size of 9,482,704 bp. Here we report the genome sequences and annotation, together with characteristics of the genome. The complete genome sequence consists of three replicons, comprising 9056 protein-coding genes and 80 RNA genes. Genes responsible for dehalogenation and uptake of haloacids were arranged as an operon. While dehalogenation of haloacetate would produce glycolate, three glycolate operons were identified. Two of these operons contain an upstream glcC regulator gene. It is likely that the expression of one of these operons is responsive to haloacetate. Genes responsible for the metabolism of dehalogenation product of halopropionate were also identified.-
dc.languageeng-
dc.relation.ispartofStandards in Genomic Sciences-
dc.rightsThis work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.-
dc.subjectBurkholderia caribensis-
dc.subjectDehalogenase-
dc.subjectGenome sequence-
dc.subjectGlycolate operon-
dc.subjectHaloacid degradation-
dc.titleComplete genome sequence and characterization of the haloacid–degrading Burkholderia caribensis MBA4-
dc.typeArticle-
dc.identifier.emailKong, KF: kongkf@hku.hk-
dc.identifier.emailTsang, JSH: jshtsang@hku.hk-
dc.identifier.authorityTsang, JSH=rp00792-
dc.description.naturepublished_or_final_version-
dc.identifier.doi10.1186/s40793-015-0109-7-
dc.identifier.pmcidPMC4665904-
dc.identifier.scopuseid_2-s2.0-84949033594-
dc.identifier.hkuros256605-
dc.identifier.volume10-
dc.identifier.spage114-
dc.identifier.epage114-
dc.identifier.eissn1944-3277-
dc.identifier.isiWOS:000368006000001-
dc.identifier.issnl1944-3277-

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