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Article: First draft genome sequence of the pathogenic fungus Lomentospora prolificans (formerly Scedosporium prolificans)
Title | First draft genome sequence of the pathogenic fungus Lomentospora prolificans (formerly Scedosporium prolificans) |
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Authors | |
Keywords | Nanopore sequencing Pathogen genomics Genome assembly Fungal genomics |
Issue Date | 2017 |
Citation | G3: Genes, Genomes, Genetics, 2017, v. 7, n. 11, p. 3831-3836 How to Cite? |
Abstract | © 2017 Luo et al. Here we describe the sequencing and assembly of the pathogenic fungus Lomentospora prolificans using a combination of short, highly accurate Illumina reads and additional coverage in very long Oxford Nanopore reads. The resulting assembly is highly contiguous, containing a total of 37,627,092 bp with over 98% of the sequence in just 26 scaffolds. Annotation identified 8896 protein-coding genes. Pulsedfield gel analysis suggests that this organism contains at least 7 and possibly 11 chromosomes, the two longest of which have sizes corresponding closely to the sizes of the longest scaffolds, at 6.6 and 5.7 Mb. |
Persistent Identifier | http://hdl.handle.net/10722/250886 |
PubMed Central ID | |
ISI Accession Number ID |
DC Field | Value | Language |
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dc.contributor.author | Luo, Ruibang | - |
dc.contributor.author | Zimin, Aleksey | - |
dc.contributor.author | Workman, Rachael | - |
dc.contributor.author | Fan, Yunfan | - |
dc.contributor.author | Pertea, Geo | - |
dc.contributor.author | Grossman, Nina | - |
dc.contributor.author | Wear, Maggie P. | - |
dc.contributor.author | Jia, Bei | - |
dc.contributor.author | Miller, Heather | - |
dc.contributor.author | Casadevall, Arturo | - |
dc.contributor.author | Timp, Winston | - |
dc.contributor.author | Zhang, Sean X. | - |
dc.contributor.author | Salzberg, Steven L. | - |
dc.date.accessioned | 2018-02-01T01:53:59Z | - |
dc.date.available | 2018-02-01T01:53:59Z | - |
dc.date.issued | 2017 | - |
dc.identifier.citation | G3: Genes, Genomes, Genetics, 2017, v. 7, n. 11, p. 3831-3836 | - |
dc.identifier.uri | http://hdl.handle.net/10722/250886 | - |
dc.description.abstract | © 2017 Luo et al. Here we describe the sequencing and assembly of the pathogenic fungus Lomentospora prolificans using a combination of short, highly accurate Illumina reads and additional coverage in very long Oxford Nanopore reads. The resulting assembly is highly contiguous, containing a total of 37,627,092 bp with over 98% of the sequence in just 26 scaffolds. Annotation identified 8896 protein-coding genes. Pulsedfield gel analysis suggests that this organism contains at least 7 and possibly 11 chromosomes, the two longest of which have sizes corresponding closely to the sizes of the longest scaffolds, at 6.6 and 5.7 Mb. | - |
dc.language | eng | - |
dc.relation.ispartof | G3: Genes, Genomes, Genetics | - |
dc.rights | This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. | - |
dc.subject | Nanopore sequencing | - |
dc.subject | Pathogen genomics | - |
dc.subject | Genome assembly | - |
dc.subject | Fungal genomics | - |
dc.title | First draft genome sequence of the pathogenic fungus Lomentospora prolificans (formerly Scedosporium prolificans) | - |
dc.type | Article | - |
dc.description.nature | published_or_final_version | - |
dc.identifier.doi | 10.1534/g3.117.300107 | - |
dc.identifier.pmid | 28963165 | - |
dc.identifier.pmcid | PMC5677167 | - |
dc.identifier.scopus | eid_2-s2.0-85032977624 | - |
dc.identifier.hkuros | 310905 | - |
dc.identifier.volume | 7 | - |
dc.identifier.issue | 11 | - |
dc.identifier.spage | 3831 | - |
dc.identifier.epage | 3836 | - |
dc.identifier.eissn | 2160-1836 | - |
dc.identifier.isi | WOS:000414469000024 | - |
dc.identifier.issnl | 2160-1836 | - |