File Download

There are no files associated with this item.

  Links for fulltext
     (May Require Subscription)
Supplementary

Book Chapter: Phylogenetic analysis using protein mass spectrometry

TitlePhylogenetic analysis using protein mass spectrometry
Authors
KeywordsMolecular evolution
Mass tree
Mass mapping
De novo sequencing
Phylogenetic tree
Phylogenetics
Issue Date2017
Citation
Methods in Molecular Biology, 2017, v. 1549, p. 135-146 How to Cite?
Abstract© Springer Science+Business Media LLC 2017. Through advances in molecular biology, comparative analysis of DNA sequences is currently the cornerstone in the study of molecular evolution and phylogenetics. Nevertheless, protein mass spectrometry offers some unique opportunities to enable phylogenetic analyses in organisms where DNA may be difficult or costly to obtain. To date, the methods of phylogenetic analysis using protein mass spectrometry can be classified into three categories: (1) de novo protein sequencing followed by classical phylogenetic reconstruction, (2) direct phylogenetic reconstruction using proteolytic peptide mass maps, and (3) mapping of mass spectral data onto classical phylogenetic trees. In this chapter, we provide a brief description of the three methods and the protocol for each method along with relevant tools and algorithms.
Persistent Identifierhttp://hdl.handle.net/10722/251192
ISSN
2023 SCImago Journal Rankings: 0.399

 

DC FieldValueLanguage
dc.contributor.authorMa, Shiyong-
dc.contributor.authorDownard, Kevin M.-
dc.contributor.authorWong, Jason W.H.-
dc.date.accessioned2018-02-01T01:54:51Z-
dc.date.available2018-02-01T01:54:51Z-
dc.date.issued2017-
dc.identifier.citationMethods in Molecular Biology, 2017, v. 1549, p. 135-146-
dc.identifier.issn1064-3745-
dc.identifier.urihttp://hdl.handle.net/10722/251192-
dc.description.abstract© Springer Science+Business Media LLC 2017. Through advances in molecular biology, comparative analysis of DNA sequences is currently the cornerstone in the study of molecular evolution and phylogenetics. Nevertheless, protein mass spectrometry offers some unique opportunities to enable phylogenetic analyses in organisms where DNA may be difficult or costly to obtain. To date, the methods of phylogenetic analysis using protein mass spectrometry can be classified into three categories: (1) de novo protein sequencing followed by classical phylogenetic reconstruction, (2) direct phylogenetic reconstruction using proteolytic peptide mass maps, and (3) mapping of mass spectral data onto classical phylogenetic trees. In this chapter, we provide a brief description of the three methods and the protocol for each method along with relevant tools and algorithms.-
dc.languageeng-
dc.relation.ispartofMethods in Molecular Biology-
dc.subjectMolecular evolution-
dc.subjectMass tree-
dc.subjectMass mapping-
dc.subjectDe novo sequencing-
dc.subjectPhylogenetic tree-
dc.subjectPhylogenetics-
dc.titlePhylogenetic analysis using protein mass spectrometry-
dc.typeBook_Chapter-
dc.description.naturelink_to_subscribed_fulltext-
dc.identifier.doi10.1007/978-1-4939-6740-7_11-
dc.identifier.scopuseid_2-s2.0-85006341884-
dc.identifier.volume1549-
dc.identifier.spage135-
dc.identifier.epage146-
dc.identifier.issnl1064-3745-

Export via OAI-PMH Interface in XML Formats


OR


Export to Other Non-XML Formats