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- Publisher Website: 10.1002/btpr.2087
- Scopus: eid_2-s2.0-84931563529
- PMID: 25864556
- WOS: WOS:000356670700029
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Article: Automated analysis of filamentous microbial morphology with AnaMorf
Title | Automated analysis of filamentous microbial morphology with AnaMorf |
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Authors | |
Keywords | ImageJ filamentous microbes image analysis morphology |
Issue Date | 2015 |
Publisher | American Chemical Society. The Journal's web site is located at http://pubs.acs.org/bp |
Citation | Biotechnology Progress, 2015, v. 31 n. 3, p. 849-852 How to Cite? |
Abstract | The morphological quantification of filamentous microbes represents an important analytical technique in the optimization of bioprocesses involving such organisms, given the demonstrated links between morphology and metabolite yield. However, in many studies, much of this quantification has required some degree of manual intervention, if it has been conducted at all, burdening biotechnologists with a time-consuming process and potentially introducing bias into analyses. Here, software for the automated quantification of filamentous microbes is presented, implemented as a plug-in for the widely used, freely available image analysis package, ImageJ. The software, together with all related source code, documentation and test data, is freely available to the community via an online repository. |
Persistent Identifier | http://hdl.handle.net/10722/279914 |
ISSN | 2023 Impact Factor: 2.5 2023 SCImago Journal Rankings: 0.527 |
ISI Accession Number ID |
DC Field | Value | Language |
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dc.contributor.author | Barry, DJ | - |
dc.contributor.author | Williams, GA | - |
dc.contributor.author | Chan, C | - |
dc.date.accessioned | 2019-12-23T08:23:37Z | - |
dc.date.available | 2019-12-23T08:23:37Z | - |
dc.date.issued | 2015 | - |
dc.identifier.citation | Biotechnology Progress, 2015, v. 31 n. 3, p. 849-852 | - |
dc.identifier.issn | 8756-7938 | - |
dc.identifier.uri | http://hdl.handle.net/10722/279914 | - |
dc.description.abstract | The morphological quantification of filamentous microbes represents an important analytical technique in the optimization of bioprocesses involving such organisms, given the demonstrated links between morphology and metabolite yield. However, in many studies, much of this quantification has required some degree of manual intervention, if it has been conducted at all, burdening biotechnologists with a time-consuming process and potentially introducing bias into analyses. Here, software for the automated quantification of filamentous microbes is presented, implemented as a plug-in for the widely used, freely available image analysis package, ImageJ. The software, together with all related source code, documentation and test data, is freely available to the community via an online repository. | - |
dc.language | eng | - |
dc.publisher | American Chemical Society. The Journal's web site is located at http://pubs.acs.org/bp | - |
dc.relation.ispartof | Biotechnology Progress | - |
dc.rights | This document is the Accepted Manuscript version of a Published Work that appeared in final form in [JournalTitle], copyright © American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see [insert ACS Articles on Request author-directed link to Published Work, see http://pubs.acs.org/page/policy/articlesonrequest/index.html]. | - |
dc.subject | ImageJ | - |
dc.subject | filamentous microbes | - |
dc.subject | image analysis | - |
dc.subject | morphology | - |
dc.title | Automated analysis of filamentous microbial morphology with AnaMorf | - |
dc.type | Article | - |
dc.identifier.email | Chan, C: ckchan09@hku.hk | - |
dc.identifier.authority | Chan, C=rp00892 | - |
dc.description.nature | link_to_subscribed_fulltext | - |
dc.identifier.doi | 10.1002/btpr.2087 | - |
dc.identifier.pmid | 25864556 | - |
dc.identifier.scopus | eid_2-s2.0-84931563529 | - |
dc.identifier.hkuros | 308710 | - |
dc.identifier.volume | 31 | - |
dc.identifier.issue | 3 | - |
dc.identifier.spage | 849 | - |
dc.identifier.epage | 852 | - |
dc.identifier.isi | WOS:000356670700029 | - |
dc.publisher.place | United States | - |
dc.identifier.issnl | 1520-6033 | - |