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Article: Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes

TitlePhylogenetic and structural diversity of aromatically dense pili from environmental metagenomes
Authors
Issue Date2020
PublisherWiley-Blackwell Publishing Ltd. The Journal's web site is located at http://www.wiley.com/WileyCDA/WileyTitle/productCd-EMI4.html
Citation
Environmental Microbiology Reports, 2020, v. 12 n. 1, p. 49-57 How to Cite?
AbstractElectroactive type IV pili, or e-pili, are used by some microbial species for extracellular electron transfer. Recent studies suggest that e-pili may be more phylogenetically and structurally diverse than previously assumed. Here, we used updated aromatic density thresholds (≥9.8% aromatic amino acids, ≤22-aa aromatic gaps and aromatic amino acids at residues 1, 24, 27, 50 and/or 51, and 32 and/or 57) to search for putative e-pilin genes in metagenomes from diverse ecosystems with active microbial metal cycling. Environmental putative e-pilins were diverse in length and phylogeny, and included truncated e-pilins in Geobacter spp., as well as longer putative e-pilins in Fe(II)-oxidizing Betaproteobacteria and Zetaproteobacteria.
Persistent Identifierhttp://hdl.handle.net/10722/289672
ISSN
2020 Impact Factor: 3.541
2020 SCImago Journal Rankings: 1.229
PubMed Central ID
ISI Accession Number ID
Errata

 

DC FieldValueLanguage
dc.contributor.authorBray, MS-
dc.contributor.authorWu, J-
dc.contributor.authorPadilla, CC-
dc.contributor.authorStewart, FJ-
dc.contributor.authorFowle, DA-
dc.contributor.authorHenny, C-
dc.contributor.authorSimister, RL-
dc.contributor.authorThompson, KJ-
dc.contributor.authorCrowe, TSA-
dc.contributor.authorGlass, JB-
dc.date.accessioned2020-10-22T08:15:49Z-
dc.date.available2020-10-22T08:15:49Z-
dc.date.issued2020-
dc.identifier.citationEnvironmental Microbiology Reports, 2020, v. 12 n. 1, p. 49-57-
dc.identifier.issn1758-2229-
dc.identifier.urihttp://hdl.handle.net/10722/289672-
dc.description.abstractElectroactive type IV pili, or e-pili, are used by some microbial species for extracellular electron transfer. Recent studies suggest that e-pili may be more phylogenetically and structurally diverse than previously assumed. Here, we used updated aromatic density thresholds (≥9.8% aromatic amino acids, ≤22-aa aromatic gaps and aromatic amino acids at residues 1, 24, 27, 50 and/or 51, and 32 and/or 57) to search for putative e-pilin genes in metagenomes from diverse ecosystems with active microbial metal cycling. Environmental putative e-pilins were diverse in length and phylogeny, and included truncated e-pilins in Geobacter spp., as well as longer putative e-pilins in Fe(II)-oxidizing Betaproteobacteria and Zetaproteobacteria.-
dc.languageeng-
dc.publisherWiley-Blackwell Publishing Ltd. The Journal's web site is located at http://www.wiley.com/WileyCDA/WileyTitle/productCd-EMI4.html-
dc.relation.ispartofEnvironmental Microbiology Reports-
dc.rightsSubmitted (preprint) Version This is the pre-peer reviewed version of the following article: [FULL CITE], which has been published in final form at [Link to final article using the DOI]. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions. Accepted (peer-reviewed) Version This is the peer reviewed version of the following article: [FULL CITE], which has been published in final form at [Link to final article using the DOI]. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions.-
dc.titlePhylogenetic and structural diversity of aromatically dense pili from environmental metagenomes-
dc.typeArticle-
dc.identifier.emailCrowe, TSA: sacrowe@hku.hk-
dc.identifier.authorityCrowe, TSA=rp02537-
dc.description.naturelink_to_OA_fulltext-
dc.identifier.doi10.1111/1758-2229.12809-
dc.identifier.pmid31701641-
dc.identifier.pmcidPMC7779115-
dc.identifier.scopuseid_2-s2.0-85075481890-
dc.identifier.hkuros316146-
dc.identifier.volume12-
dc.identifier.issue1-
dc.identifier.spage49-
dc.identifier.epage57-
dc.identifier.isiWOS:000497761800001-
dc.publisher.placeUnited Kingdom-
dc.relation.erratumdoi:10.1111/1758-2229.12848-
dc.identifier.issnl1758-2229-

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