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Article: Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance

TitleSequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance
Authors
KeywordsRasbora myersi
Mitogenome
Gene arrangement
Light strand origin
Phylogeny
Issue Date2019
PublisherElsevier BV. The Journal's web site is located at http://www.journals.elsevier.com/gene-reports
Citation
Gene Reports, 2019, v. 17, p. article no. 100499 How to Cite?
AbstractThe Seluang fish (Rasbora myersi) is a small ray-finned fish categorized under the genus Rasbora in the Cyprinidae family. In this study, the complete mitogenome sequence of R. myersi was sequenced using two primer pairs targeting overlapping regions. The mitogenome is 16,581 bp in length, encompassing 22 transfer RNA genes, 13 protein-coding genes, two ribosomal RNA genes and a putative control region. Identical gene organisation was observed between this species and other genus counterparts. The heavy strand accommodates 28 genes while the light strand houses the other nine genes. Most protein-coding genes utilize ATG as start codon, excluding COI gene, which employs GTG instead. The central conserved sequence blocks (CSB-F, CSB-E and CSB-D), variable sequence blocks (CSB-3, CSB-2 and CSB-1) as well as the terminal associated sequence (TAS) are conserved within the control region. The R. myersi formed a trio with R. borapetensis and R. argyrotaenia in a moderately strong clade with bootstrap value of 86. This work acts as essential gateway towards further molecular evolution and population genetics studies of the Rasbora genus in future.
Persistent Identifierhttp://hdl.handle.net/10722/290813
ISSN
2020 SCImago Journal Rankings: 0.235
ISI Accession Number ID

 

DC FieldValueLanguage
dc.contributor.authorLim, LWK-
dc.contributor.authorRoja, JS-
dc.contributor.authorKamar, CKA-
dc.contributor.authorChung, HH-
dc.contributor.authorLIAO, Y-
dc.contributor.authorLam, TY-
dc.contributor.authorChong, YL-
dc.date.accessioned2020-11-02T05:47:30Z-
dc.date.available2020-11-02T05:47:30Z-
dc.date.issued2019-
dc.identifier.citationGene Reports, 2019, v. 17, p. article no. 100499-
dc.identifier.issn2452-0144-
dc.identifier.urihttp://hdl.handle.net/10722/290813-
dc.description.abstractThe Seluang fish (Rasbora myersi) is a small ray-finned fish categorized under the genus Rasbora in the Cyprinidae family. In this study, the complete mitogenome sequence of R. myersi was sequenced using two primer pairs targeting overlapping regions. The mitogenome is 16,581 bp in length, encompassing 22 transfer RNA genes, 13 protein-coding genes, two ribosomal RNA genes and a putative control region. Identical gene organisation was observed between this species and other genus counterparts. The heavy strand accommodates 28 genes while the light strand houses the other nine genes. Most protein-coding genes utilize ATG as start codon, excluding COI gene, which employs GTG instead. The central conserved sequence blocks (CSB-F, CSB-E and CSB-D), variable sequence blocks (CSB-3, CSB-2 and CSB-1) as well as the terminal associated sequence (TAS) are conserved within the control region. The R. myersi formed a trio with R. borapetensis and R. argyrotaenia in a moderately strong clade with bootstrap value of 86. This work acts as essential gateway towards further molecular evolution and population genetics studies of the Rasbora genus in future.-
dc.languageeng-
dc.publisherElsevier BV. The Journal's web site is located at http://www.journals.elsevier.com/gene-reports-
dc.relation.ispartofGene Reports-
dc.subjectRasbora myersi-
dc.subjectMitogenome-
dc.subjectGene arrangement-
dc.subjectLight strand origin-
dc.subjectPhylogeny-
dc.titleSequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance-
dc.typeArticle-
dc.identifier.emailLam, TY: ttylam@hku.hk-
dc.identifier.authorityLam, TY=rp01733-
dc.description.naturelink_to_subscribed_fulltext-
dc.identifier.doi10.1016/j.genrep.2019.100499-
dc.identifier.scopuseid_2-s2.0-85071863410-
dc.identifier.hkuros317743-
dc.identifier.volume17-
dc.identifier.spagearticle no. 100499-
dc.identifier.epagearticle no. 100499-
dc.identifier.isiWOS:000496486200061-
dc.publisher.placeNetherlands-

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