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- Publisher Website: 10.1093/gigascience/giaf023
- Scopus: eid_2-s2.0-105001318781
- PMID: 40139907
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Article: Observational, causal relationship and shared genetic basis between cholelithiasis and gastroesophageal reflux disease: Evidence from a cohort study and comprehensive genetic analysis
| Title | Observational, causal relationship and shared genetic basis between cholelithiasis and gastroesophageal reflux disease: Evidence from a cohort study and comprehensive genetic analysis |
|---|---|
| Authors | |
| Keywords | causal association cholelithiasis cohort study gastroesophageal reflux disease genetic analyses Mendelian randomization shared genetic basis |
| Issue Date | 1-Jan-2025 |
| Publisher | Oxford University Press |
| Citation | GigaScience, 2025, v. 14 How to Cite? |
| Abstract | Objective: Cholelithiasis and gastroesophageal reflux disease (GERD) contribute to significant health concerns. We aimed to investigate the potential observational, causal, and genetic relationships between cholelithiasis and GERD. Design: The observational correlations were assessed based on the prospective cohort study from UK Biobank. Then, by leveraging the genome-wide summary statistics of cholelithiasis (N = 334,277) and GERD (N = 332,601), the bidirectional causal associations were evaluated using Mendelian randomization (MR) analysis. Subsequently, a series of genetic analyses was used to assess the genetic correlation, shared loci, and genes between cholelithiasis and GERD. Results: The prospective cohort analyses revealed a significantly increased risk of GERD in individuals with cholelithiasis (hazard ratio [HR] = 1.99; 95% confidence interval [CI], 1.89-2.10) and a higher risk of cholelithiasis among patients with GERD (HR = 2.30; 95% CI, 2.18-2.44). The MR study indicated the causal effect of genetic liability to cholelithiasis on the incidence of GERD (odds ratio [OR] = 1.08; 95% CI, 1.05-1.11) and the causal effect of genetic predicted GERD on cholelithiasis (OR = 1.15; 95% CI, 1.02-1.31). In addition, cholelithiasis and GERD exhibited a strong genetic association. Cross-trait meta-analyses identified 5 novel independent loci shared between cholelithiasis and GERD. Three shared genes, including SUN2, CBY1, and JOSD1, were further identified as novel risk genes. Conclusion: The elucidation of the shared genetic basis underlying the phenotypic relationship of these 2 complex phenotypes offers new insights into the intrinsic linkage between cholelithiasis and GERD, providing a novel research direction for future therapeutic strategy and risk prediction. |
| Persistent Identifier | http://hdl.handle.net/10722/362605 |
| DC Field | Value | Language |
|---|---|---|
| dc.contributor.author | Lyu, Yanlin | - |
| dc.contributor.author | Tong, Shuangshuang | - |
| dc.contributor.author | Huang, Wentao | - |
| dc.contributor.author | Ma, Yuying | - |
| dc.contributor.author | Zeng, Ruijie | - |
| dc.contributor.author | Jiang, Rui | - |
| dc.contributor.author | Luo, Ruibang | - |
| dc.contributor.author | Leung, Felix W. | - |
| dc.contributor.author | Lian, Qizhou | - |
| dc.contributor.author | Sha, Weihong | - |
| dc.contributor.author | Chen, Hao | - |
| dc.date.accessioned | 2025-09-26T00:36:24Z | - |
| dc.date.available | 2025-09-26T00:36:24Z | - |
| dc.date.issued | 2025-01-01 | - |
| dc.identifier.citation | GigaScience, 2025, v. 14 | - |
| dc.identifier.uri | http://hdl.handle.net/10722/362605 | - |
| dc.description.abstract | Objective: Cholelithiasis and gastroesophageal reflux disease (GERD) contribute to significant health concerns. We aimed to investigate the potential observational, causal, and genetic relationships between cholelithiasis and GERD. Design: The observational correlations were assessed based on the prospective cohort study from UK Biobank. Then, by leveraging the genome-wide summary statistics of cholelithiasis (N = 334,277) and GERD (N = 332,601), the bidirectional causal associations were evaluated using Mendelian randomization (MR) analysis. Subsequently, a series of genetic analyses was used to assess the genetic correlation, shared loci, and genes between cholelithiasis and GERD. Results: The prospective cohort analyses revealed a significantly increased risk of GERD in individuals with cholelithiasis (hazard ratio [HR] = 1.99; 95% confidence interval [CI], 1.89-2.10) and a higher risk of cholelithiasis among patients with GERD (HR = 2.30; 95% CI, 2.18-2.44). The MR study indicated the causal effect of genetic liability to cholelithiasis on the incidence of GERD (odds ratio [OR] = 1.08; 95% CI, 1.05-1.11) and the causal effect of genetic predicted GERD on cholelithiasis (OR = 1.15; 95% CI, 1.02-1.31). In addition, cholelithiasis and GERD exhibited a strong genetic association. Cross-trait meta-analyses identified 5 novel independent loci shared between cholelithiasis and GERD. Three shared genes, including SUN2, CBY1, and JOSD1, were further identified as novel risk genes. Conclusion: The elucidation of the shared genetic basis underlying the phenotypic relationship of these 2 complex phenotypes offers new insights into the intrinsic linkage between cholelithiasis and GERD, providing a novel research direction for future therapeutic strategy and risk prediction. | - |
| dc.language | eng | - |
| dc.publisher | Oxford University Press | - |
| dc.relation.ispartof | GigaScience | - |
| dc.rights | This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. | - |
| dc.subject | causal association | - |
| dc.subject | cholelithiasis | - |
| dc.subject | cohort study | - |
| dc.subject | gastroesophageal reflux disease | - |
| dc.subject | genetic analyses | - |
| dc.subject | Mendelian randomization | - |
| dc.subject | shared genetic basis | - |
| dc.title | Observational, causal relationship and shared genetic basis between cholelithiasis and gastroesophageal reflux disease: Evidence from a cohort study and comprehensive genetic analysis | - |
| dc.type | Article | - |
| dc.identifier.doi | 10.1093/gigascience/giaf023 | - |
| dc.identifier.pmid | 40139907 | - |
| dc.identifier.scopus | eid_2-s2.0-105001318781 | - |
| dc.identifier.volume | 14 | - |
| dc.identifier.eissn | 2047-217X | - |
| dc.identifier.issnl | 2047-217X | - |
