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Article: Observational, causal relationship and shared genetic basis between cholelithiasis and gastroesophageal reflux disease: Evidence from a cohort study and comprehensive genetic analysis

TitleObservational, causal relationship and shared genetic basis between cholelithiasis and gastroesophageal reflux disease: Evidence from a cohort study and comprehensive genetic analysis
Authors
Keywordscausal association
cholelithiasis
cohort study
gastroesophageal reflux disease
genetic analyses
Mendelian randomization
shared genetic basis
Issue Date1-Jan-2025
PublisherOxford University Press
Citation
GigaScience, 2025, v. 14 How to Cite?
AbstractObjective: Cholelithiasis and gastroesophageal reflux disease (GERD) contribute to significant health concerns. We aimed to investigate the potential observational, causal, and genetic relationships between cholelithiasis and GERD. Design: The observational correlations were assessed based on the prospective cohort study from UK Biobank. Then, by leveraging the genome-wide summary statistics of cholelithiasis (N = 334,277) and GERD (N = 332,601), the bidirectional causal associations were evaluated using Mendelian randomization (MR) analysis. Subsequently, a series of genetic analyses was used to assess the genetic correlation, shared loci, and genes between cholelithiasis and GERD. Results: The prospective cohort analyses revealed a significantly increased risk of GERD in individuals with cholelithiasis (hazard ratio [HR] = 1.99; 95% confidence interval [CI], 1.89-2.10) and a higher risk of cholelithiasis among patients with GERD (HR = 2.30; 95% CI, 2.18-2.44). The MR study indicated the causal effect of genetic liability to cholelithiasis on the incidence of GERD (odds ratio [OR] = 1.08; 95% CI, 1.05-1.11) and the causal effect of genetic predicted GERD on cholelithiasis (OR = 1.15; 95% CI, 1.02-1.31). In addition, cholelithiasis and GERD exhibited a strong genetic association. Cross-trait meta-analyses identified 5 novel independent loci shared between cholelithiasis and GERD. Three shared genes, including SUN2, CBY1, and JOSD1, were further identified as novel risk genes. Conclusion: The elucidation of the shared genetic basis underlying the phenotypic relationship of these 2 complex phenotypes offers new insights into the intrinsic linkage between cholelithiasis and GERD, providing a novel research direction for future therapeutic strategy and risk prediction.
Persistent Identifierhttp://hdl.handle.net/10722/362605

 

DC FieldValueLanguage
dc.contributor.authorLyu, Yanlin-
dc.contributor.authorTong, Shuangshuang-
dc.contributor.authorHuang, Wentao-
dc.contributor.authorMa, Yuying-
dc.contributor.authorZeng, Ruijie-
dc.contributor.authorJiang, Rui-
dc.contributor.authorLuo, Ruibang-
dc.contributor.authorLeung, Felix W.-
dc.contributor.authorLian, Qizhou-
dc.contributor.authorSha, Weihong-
dc.contributor.authorChen, Hao-
dc.date.accessioned2025-09-26T00:36:24Z-
dc.date.available2025-09-26T00:36:24Z-
dc.date.issued2025-01-01-
dc.identifier.citationGigaScience, 2025, v. 14-
dc.identifier.urihttp://hdl.handle.net/10722/362605-
dc.description.abstractObjective: Cholelithiasis and gastroesophageal reflux disease (GERD) contribute to significant health concerns. We aimed to investigate the potential observational, causal, and genetic relationships between cholelithiasis and GERD. Design: The observational correlations were assessed based on the prospective cohort study from UK Biobank. Then, by leveraging the genome-wide summary statistics of cholelithiasis (N = 334,277) and GERD (N = 332,601), the bidirectional causal associations were evaluated using Mendelian randomization (MR) analysis. Subsequently, a series of genetic analyses was used to assess the genetic correlation, shared loci, and genes between cholelithiasis and GERD. Results: The prospective cohort analyses revealed a significantly increased risk of GERD in individuals with cholelithiasis (hazard ratio [HR] = 1.99; 95% confidence interval [CI], 1.89-2.10) and a higher risk of cholelithiasis among patients with GERD (HR = 2.30; 95% CI, 2.18-2.44). The MR study indicated the causal effect of genetic liability to cholelithiasis on the incidence of GERD (odds ratio [OR] = 1.08; 95% CI, 1.05-1.11) and the causal effect of genetic predicted GERD on cholelithiasis (OR = 1.15; 95% CI, 1.02-1.31). In addition, cholelithiasis and GERD exhibited a strong genetic association. Cross-trait meta-analyses identified 5 novel independent loci shared between cholelithiasis and GERD. Three shared genes, including SUN2, CBY1, and JOSD1, were further identified as novel risk genes. Conclusion: The elucidation of the shared genetic basis underlying the phenotypic relationship of these 2 complex phenotypes offers new insights into the intrinsic linkage between cholelithiasis and GERD, providing a novel research direction for future therapeutic strategy and risk prediction.-
dc.languageeng-
dc.publisherOxford University Press-
dc.relation.ispartofGigaScience-
dc.rightsThis work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.-
dc.subjectcausal association-
dc.subjectcholelithiasis-
dc.subjectcohort study-
dc.subjectgastroesophageal reflux disease-
dc.subjectgenetic analyses-
dc.subjectMendelian randomization-
dc.subjectshared genetic basis-
dc.titleObservational, causal relationship and shared genetic basis between cholelithiasis and gastroesophageal reflux disease: Evidence from a cohort study and comprehensive genetic analysis-
dc.typeArticle-
dc.identifier.doi10.1093/gigascience/giaf023-
dc.identifier.pmid40139907-
dc.identifier.scopuseid_2-s2.0-105001318781-
dc.identifier.volume14-
dc.identifier.eissn2047-217X-
dc.identifier.issnl2047-217X-

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