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- Publisher Website: 10.1093/molbev/msy194
- Scopus: eid_2-s2.0-85061338120
- WOS: WOS:000454355100015
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Article: Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree
| Title | Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree |
|---|---|
| Authors | |
| Keywords | Data integration Phylogeny Visualization |
| Issue Date | 2018 |
| Publisher | Oxford University Press. The Journal's web site is located at http://mbe.oxfordjournals.org/ |
| Citation | Molecular Biology and Evolution, 2018, v. 35, p. 3041-3043 How to Cite? |
| Abstract | Ggtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after reordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context. Ggtree is available from http://www.bioconductor.org/packages/ggtree. |
| Persistent Identifier | http://hdl.handle.net/10722/268260 |
| ISSN | 2023 Impact Factor: 11.0 2023 SCImago Journal Rankings: 4.061 |
| ISI Accession Number ID |
| DC Field | Value | Language |
|---|---|---|
| dc.contributor.author | Yu, G | - |
| dc.contributor.author | Lam, TY | - |
| dc.contributor.author | Zhu, H | - |
| dc.contributor.author | Guan, Y | - |
| dc.date.accessioned | 2019-03-18T04:21:56Z | - |
| dc.date.available | 2019-03-18T04:21:56Z | - |
| dc.date.issued | 2018 | - |
| dc.identifier.citation | Molecular Biology and Evolution, 2018, v. 35, p. 3041-3043 | - |
| dc.identifier.issn | 0737-4038 | - |
| dc.identifier.uri | http://hdl.handle.net/10722/268260 | - |
| dc.description.abstract | Ggtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after reordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context. Ggtree is available from http://www.bioconductor.org/packages/ggtree. | - |
| dc.language | eng | - |
| dc.publisher | Oxford University Press. The Journal's web site is located at http://mbe.oxfordjournals.org/ | - |
| dc.relation.ispartof | Molecular Biology and Evolution | - |
| dc.rights | Pre-print: Journal Title] ©: [year] [owner as specified on the article] Published by Oxford University Press [on behalf of xxxxxx]. All rights reserved. Pre-print (Once an article is published, preprint notice should be amended to): This is an electronic version of an article published in [include the complete citation information for the final version of the Article as published in the print edition of the Journal.] Post-print: This is a pre-copy-editing, author-produced PDF of an article accepted for publication in [insert journal title] following peer review. The definitive publisher-authenticated version [insert complete citation information here] is available online at: xxxxxxx [insert URL that the author will receive upon publication here]. | - |
| dc.subject | Data integration | - |
| dc.subject | Phylogeny | - |
| dc.subject | Visualization | - |
| dc.title | Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree | - |
| dc.type | Article | - |
| dc.identifier.email | Lam, TY: ttylam@hku.hk | - |
| dc.identifier.email | Zhu, H: zhuhch@hku.hk | - |
| dc.identifier.email | Guan, Y: yguan@hkucc.hku.hk | - |
| dc.identifier.authority | Lam, TY=rp01733 | - |
| dc.identifier.authority | Zhu, H=rp01535 | - |
| dc.identifier.authority | Guan, Y=rp00397 | - |
| dc.description.nature | link_to_subscribed_fulltext | - |
| dc.identifier.doi | 10.1093/molbev/msy194 | - |
| dc.identifier.scopus | eid_2-s2.0-85061338120 | - |
| dc.identifier.hkuros | 297125 | - |
| dc.identifier.volume | 35 | - |
| dc.identifier.spage | 3041 | - |
| dc.identifier.epage | 3043 | - |
| dc.identifier.isi | WOS:000454355100015 | - |
| dc.publisher.place | United States | - |
| dc.identifier.issnl | 0737-4038 | - |