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Article: Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree

TitleTwo Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree
Authors
Issue Date2018
PublisherOxford University Press. The Journal's web site is located at http://mbe.oxfordjournals.org/
Citation
Molecular Biology and Evolution, 2018, v. 35, p. 3041-3043 How to Cite?
AbstractGgtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after reordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context. Ggtree is available from http://www.bioconductor.org/packages/ggtree.
Persistent Identifierhttp://hdl.handle.net/10722/268260
ISSN
2019 Impact Factor: 11.062
2015 SCImago Journal Rankings: 8.168

 

DC FieldValueLanguage
dc.contributor.authorYu, G-
dc.contributor.authorLam, TY-
dc.contributor.authorZhu, H-
dc.contributor.authorGuan, Y-
dc.date.accessioned2019-03-18T04:21:56Z-
dc.date.available2019-03-18T04:21:56Z-
dc.date.issued2018-
dc.identifier.citationMolecular Biology and Evolution, 2018, v. 35, p. 3041-3043-
dc.identifier.issn0737-4038-
dc.identifier.urihttp://hdl.handle.net/10722/268260-
dc.description.abstractGgtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after reordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context. Ggtree is available from http://www.bioconductor.org/packages/ggtree.-
dc.languageeng-
dc.publisherOxford University Press. The Journal's web site is located at http://mbe.oxfordjournals.org/-
dc.relation.ispartofMolecular Biology and Evolution-
dc.rightsPre-print: Journal Title] ©: [year] [owner as specified on the article] Published by Oxford University Press [on behalf of xxxxxx]. All rights reserved. Pre-print (Once an article is published, preprint notice should be amended to): This is an electronic version of an article published in [include the complete citation information for the final version of the Article as published in the print edition of the Journal.] Post-print: This is a pre-copy-editing, author-produced PDF of an article accepted for publication in [insert journal title] following peer review. The definitive publisher-authenticated version [insert complete citation information here] is available online at: xxxxxxx [insert URL that the author will receive upon publication here].-
dc.titleTwo Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree-
dc.typeArticle-
dc.identifier.emailLam, TY: ttylam@hku.hk-
dc.identifier.emailZhu, H: zhuhch@hku.hk-
dc.identifier.emailGuan, Y: yguan@hkucc.hku.hk-
dc.identifier.authorityLam, TY=rp01733-
dc.identifier.authorityZhu, H=rp01535-
dc.identifier.authorityGuan, Y=rp00397-
dc.description.naturelink_to_subscribed_fulltext-
dc.identifier.doi10.1093/molbev/msy194-
dc.identifier.scopuseid_2-s2.0-85061338120-
dc.identifier.hkuros297125-
dc.identifier.volume35-
dc.identifier.spage3041-
dc.identifier.epage3043-
dc.publisher.placeUnited States-

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