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Article: Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae)
Title | Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae) |
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Authors | |
Keywords | Ecology Evolutionary Biology Subjects Genetics and Genomics |
Issue Date | 25-Apr-2024 |
Publisher | GigaScience Press |
Citation | Gigabyte, 2024, v. 2024 How to Cite? |
Abstract | The edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae) is wood-decaying and can be commonly found worldwide. It has found application in food additives, given its ability to synthesize long-chain glycolipids, among other uses. In this study, we present the genome assembly of D. spathularia using a combination of PacBio HiFi reads and Omni-C data. The genome size is 29.2 Mb. It has high sequence contiguity and completeness, with a scaffold N50 of 1.925 Mb and a 92.0% BUSCO score. A total of 11,510 protein-coding genes and 474.7 kb repeats (accounting for 1.62% of the genome) were predicted. The D. spathularia genome assembly generated in this study provides a valuable resource for understanding their ecology, such as their wood-decaying capability, their evolutionary relationships with other fungi, and their unique biology and applications in the food industry. |
Persistent Identifier | http://hdl.handle.net/10722/347343 |
DC Field | Value | Language |
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dc.contributor.author | Hui, Jerome HL | - |
dc.contributor.author | Chan, Ting Fung | - |
dc.contributor.author | Chan, Leo Lai | - |
dc.contributor.author | Cheung, Siu Gin | - |
dc.contributor.author | Cheang, Chi Chiu | - |
dc.contributor.author | Fang, James Kar Hei | - |
dc.contributor.author | Gaitan-Espitia, Juan Diego | - |
dc.contributor.author | Lau, Stanley Chun Kwan | - |
dc.contributor.author | HeiSung, Yik | - |
dc.contributor.author | Wong, Chris Kong Chu | - |
dc.contributor.author | Yip, Kevin Yuk Lap | - |
dc.contributor.author | Wei, Yingying | - |
dc.contributor.author | Chong, Tze Kiu | - |
dc.contributor.author | Law, Sean Tsz Sum | - |
dc.contributor.author | Nong, Wenyan | - |
dc.contributor.author | Yip, Ho Yin | - |
dc.date.accessioned | 2024-09-21T00:31:11Z | - |
dc.date.available | 2024-09-21T00:31:11Z | - |
dc.date.issued | 2024-04-25 | - |
dc.identifier.citation | Gigabyte, 2024, v. 2024 | - |
dc.identifier.uri | http://hdl.handle.net/10722/347343 | - |
dc.description.abstract | The edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae) is wood-decaying and can be commonly found worldwide. It has found application in food additives, given its ability to synthesize long-chain glycolipids, among other uses. In this study, we present the genome assembly of D. spathularia using a combination of PacBio HiFi reads and Omni-C data. The genome size is 29.2 Mb. It has high sequence contiguity and completeness, with a scaffold N50 of 1.925 Mb and a 92.0% BUSCO score. A total of 11,510 protein-coding genes and 474.7 kb repeats (accounting for 1.62% of the genome) were predicted. The D. spathularia genome assembly generated in this study provides a valuable resource for understanding their ecology, such as their wood-decaying capability, their evolutionary relationships with other fungi, and their unique biology and applications in the food industry. | - |
dc.language | eng | - |
dc.publisher | GigaScience Press | - |
dc.relation.ispartof | Gigabyte | - |
dc.rights | This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. | - |
dc.subject | Ecology | - |
dc.subject | Evolutionary Biology | - |
dc.subject | Subjects Genetics and Genomics | - |
dc.title | Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae) | - |
dc.type | Article | - |
dc.identifier.doi | 10.46471/gigabyte.120 | - |
dc.identifier.scopus | eid_2-s2.0-85193683848 | - |
dc.identifier.volume | 2024 | - |
dc.identifier.eissn | 2709-4715 | - |
dc.identifier.issnl | 2709-4715 | - |