File Download
  Links for fulltext
     (May Require Subscription)
Supplementary

Article: Genome assembly of the milky mangrove Excoecaria agallocha

TitleGenome assembly of the milky mangrove Excoecaria agallocha
Authors
Hui, Jerome H.L.Chan, Ting FungChan, Leo LaiCheung, Siu GinCheang, Chi ChiuFang, James Kar HeiGaitan-Espitia, Juan DiegoLau, Stanley Chun KwanSung, Yik HeiWong, Chris Kong ChuYip, Kevin Yuk LapWei, YingyingLaw, Sean Tsz SumSo, Wai LokNong, WenyanLau, David Tai WaiLee, Shing YipYip, Ho Yin
KeywordsBotany
Genetics and Genomics
Plant Genetics
Issue Date1-Jan-2024
PublisherGigaScience Press
Citation
Gigabyte, 2024, v. 2024 How to Cite?
DOI: http://dx.doi.org/10.46471/gigabyte.119
AbstractThe milky mangrove Excoecaria agallocha is a latex-secreting mangrove that are distributed in tropical and subtropical regions. While its poisonous latex is regarded as a potential source of phytochemicals for biomedical applications, the genomic resources of E. agallocha remains limited. Here, we present a chromosomal level genome of E. agallocha, assembled from the combination of PacBio long-read sequencing and Omni-C data. The resulting assembly size is 1,332.45 Mb and has high contiguity and completeness with a scaffold N50 of 58.9 Mb and a BUSCO score of 98.4%, with 86.08% of sequences anchored to 18 pseudomolecules. 73,740 protein-coding genes were also predicted. The milky mangrove genome provides a useful resource for further understanding the biosynthesis of phytochemical compounds in E. agallocha.
Persistent Identifierhttp://hdl.handle.net/10722/347380

 

DC FieldValueLanguage
dc.contributor.authorHui, Jerome H.L.-
dc.contributor.authorChan, Ting Fung-
dc.contributor.authorChan, Leo Lai-
dc.contributor.authorCheung, Siu Gin-
dc.contributor.authorCheang, Chi Chiu-
dc.contributor.authorFang, James Kar Hei-
dc.contributor.authorGaitan-Espitia, Juan Diego-
dc.contributor.authorLau, Stanley Chun Kwan-
dc.contributor.authorSung, Yik Hei-
dc.contributor.authorWong, Chris Kong Chu-
dc.contributor.authorYip, Kevin Yuk Lap-
dc.contributor.authorWei, Yingying-
dc.contributor.authorLaw, Sean Tsz Sum-
dc.contributor.authorSo, Wai Lok-
dc.contributor.authorNong, Wenyan-
dc.contributor.authorLau, David Tai Wai-
dc.contributor.authorLee, Shing Yip-
dc.contributor.authorYip, Ho Yin-
dc.date.accessioned2024-09-23T00:30:13Z-
dc.date.available2024-09-23T00:30:13Z-
dc.date.issued2024-01-01-
dc.identifier.citationGigabyte, 2024, v. 2024-
dc.identifier.urihttp://hdl.handle.net/10722/347380-
dc.description.abstractThe milky mangrove Excoecaria agallocha is a latex-secreting mangrove that are distributed in tropical and subtropical regions. While its poisonous latex is regarded as a potential source of phytochemicals for biomedical applications, the genomic resources of E. agallocha remains limited. Here, we present a chromosomal level genome of E. agallocha, assembled from the combination of PacBio long-read sequencing and Omni-C data. The resulting assembly size is 1,332.45 Mb and has high contiguity and completeness with a scaffold N50 of 58.9 Mb and a BUSCO score of 98.4%, with 86.08% of sequences anchored to 18 pseudomolecules. 73,740 protein-coding genes were also predicted. The milky mangrove genome provides a useful resource for further understanding the biosynthesis of phytochemical compounds in E. agallocha.-
dc.languageeng-
dc.publisherGigaScience Press-
dc.relation.ispartofGigabyte-
dc.rightsThis work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.-
dc.subjectBotany-
dc.subjectGenetics and Genomics-
dc.subjectPlant Genetics-
dc.titleGenome assembly of the milky mangrove Excoecaria agallocha-
dc.typeArticle-
dc.description.naturepublished_or_final_version-
dc.identifier.doi10.46471/gigabyte.119-
dc.identifier.scopuseid_2-s2.0-85193687412-
dc.identifier.volume2024-
dc.identifier.eissn2709-4715-
dc.identifier.issnl2709-4715-

Export via OAI-PMH Interface in XML Formats

OR

Export to Other Non-XML Formats